FastQCFastQC Report
Wed 31 May 2023
EGAF00007948619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568500
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51230.9011433597185576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24030.4226912928759895No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19830.3488126649076517No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15390.27071240105540895No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14490.25488126649076515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12300.21635883905013192No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12090.21266490765171503No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11020.1938434476693052No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9150.16094986807387862No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9110.1602462620932278No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9080.15971855760773965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8660.15233069481090591No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8380.14740545294635005No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8320.1463500439753738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8310.14617414248021107No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8090.14230430958663148No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7190.12647317502198768No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6780.11926121372031662No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6100.10729991204925242No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5860.10307827616534741No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5830.10255057167985929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)