FastQCFastQC Report
Sun 21 May 2023
EGAF00007948621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566425
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50850.8977357990907887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37020.6535728472436775No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32670.5767753895043475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23270.4108222624354504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22070.38963675685218696No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18410.32502096482323345No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15280.2697621044268879No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14810.26146444807344305No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10440.184313898574392No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9120.16100984243280222No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8640.15253564019949684No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8630.15235909431963632No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8530.15059363552103103No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6710.1184622853864148No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6490.11457827602948316No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6270.11069426667255154No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6160.10875226199408572No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5870.10363243147813038No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5850.10327933971840933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)