FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536235
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA57141.065577591913993No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50850.9482782735181404No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47750.8904677986330619No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA30570.5700858765280148No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA29830.556285956716738No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16880.31478736001939445No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13260.24727964418585135No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13050.2433634507258944No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11360.21184741764338397No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10720.19991235186065812No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10190.19002862550933824No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9930.18518000503510587No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9620.17939895754659804No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9550.1780935597266124No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9330.17399088086380038No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9100.16970171659813327No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8050.15012074929834868No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7930.14788292446408757No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7610.14191539157272465No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7380.13762622730705754No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7370.13743974190420244No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7210.13445597545852098No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6590.1228938804815053No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6350.11841823081298311No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6290.11729931839585257No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6280.11711283299299746No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6180.11524797896444655No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5830.10872098986451835No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5680.10592370882169198No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5630.10499128180741653No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5460.10182102995887996No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5410.1008886029446045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)