FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535862
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50030.9336358987948389No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22640.42249683687217976No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13720.2560360689879111No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13590.25361007124968743No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11950.22300517670594297No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.15974262030149555No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8130.15171816624429424No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8030.14985201413796834No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7900.1474260163997447No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7880.14705278597847954No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7710.14388032739772555No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7220.13473618207672872No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7010.13081726265344434No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7000.13063064744281175No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6090.11364866327524623No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5630.10506436358614718No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5460.10189190500539318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)