FastQCFastQC Report
Wed 31 May 2023
EGAF00007948629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences584155
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31520.5395828162046032No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20240.346483381979098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15020.25712353741729504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13420.22973354674701063No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13140.22494029837971086No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12110.20730799188571525No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10970.1877926235331376No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9030.15458225984541774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6870.11760577244053377No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6600.11298371151492327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5890.10082940315498455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)