FastQCFastQC Report
Wed 31 May 2023
EGAF00007948632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503566
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13520.26848516381169496No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11270.22380383107676055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9980.19818653364206482No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8350.16581739037186785No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7870.1562853727217485No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6220.12351906204946322No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5930.1177601347191828No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5600.11120687258472574No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5570.11061112148159327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)