FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503566
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45730.9081232648749122No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29310.5820488277604128No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11190.2222151614684073No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9890.19639928033266743No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7770.15429953571130695No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6660.13225674489540595No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6580.13066807528705274No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6050.12014313913171262No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5720.11358987699725558No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.10961820297637251No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.1062422800586219No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5090.10107910383147392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)