FastQCFastQC Report
Wed 31 May 2023
EGAF00007948635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498525
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46280.9283385988666567No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32230.6465071962288751No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25520.5119101348979489No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19890.3989769820971867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19310.387342660849506No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18730.37570833960182537No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14320.28724737977032244No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13600.2728047740835465No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13390.26859234742490345No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11920.23910536081440248No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11920.23910536081440248No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11790.23649766812095682No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11060.22185447068853117No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10610.21282784213429617No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.21222606689734716No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10500.21062133293214985No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG10440.20941778245825185No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10370.2080136402387042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10000.2005917456496665No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9590.1923674840780302No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT9480.19016097487588388No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9460.18975979138458454No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9190.18434381425204352No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG9030.18113434632164885No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8510.1707035755478662No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8440.16929943332831854No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7670.15385386891329422No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7550.15144676796549822No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7470.14984203400030088No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7380.1480367082894539No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7370.1478361165438042No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7240.14522842385035856No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7100.14242013941126322No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7080.14201895591996389No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6780.1360012035504739No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6770.13580061180482422No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6510.13058522641793288No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6500.13038463467228323No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6390.1281781254701369No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6330.1269745749962389No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC6240.12516924928539191No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5860.11754676295070458No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5830.11694498771375558No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5760.11554084549420791No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5650.11333433629206159No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5630.11293315280076226No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5570.11172960232686424No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5420.10872072614211926No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5390.10811895090517025No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5290.10611303344867358No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5280.10591244170302391No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5050.10129883155308159No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5030.10089764806178227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)