FastQCFastQC Report
Wed 31 May 2023
EGAF00007948636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498159
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15630.3137552468187868No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13780.27661850935143195No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA12880.25855198842136745No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11740.23566772857661913No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10260.20595833860273527No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8790.1764496877502966No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8530.1712304705927224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8170.1640038622206966No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7790.1563757756057805No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA7610.1527624714197676No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7110.14272551534750955No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6950.13951368940438694No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC6670.13389299400392243No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6580.132086341910916No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6360.12767008123912246No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6330.12706786387478697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5230.10498656051581925No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4990.10016882160113537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)