FastQCFastQC Report
Wed 31 May 2023
EGAF00007948638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505543
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19060.37702035237358644No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17820.35249227068716216No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17270.34161287961657066No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16130.3190628690338903No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14160.2800948682901355No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12110.23954441066338572No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT10060.19899395303663586No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9740.1926641255046554No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9490.18771894774529566No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9390.18574087664155176No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9230.18257596287556152No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8450.16714700826635914No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7610.15053121099491043No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7310.14459699768367873No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7170.1418276981384373No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6830.13510225638570805No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6810.13470664216495926No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6310.12481628664623978No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5820.1151237382378947No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5760.11393689557564837No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5710.11294786002377642No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5650.11176101736153007No Hit
GCCGCCCTGTTCCTGGATATCCGGGGACAGGGTCGGATCGGACA5480.10839829648516545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)