FastQCFastQC Report
Wed 31 May 2023
EGAF00007948639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505543
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46860.9269241192143892No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39560.7825249286410849No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39010.7716455375704935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20210.3997681700666412No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18170.35941551955026574No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16450.3253926965658707No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11200.22154396361931625No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT10510.2078952730034834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10350.20473035923749316No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9710.19207070417353223No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8630.17070753625309815No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8580.1697185007012262No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8350.16516893716261524No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8070.15963033807213234No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7130.14103646969693973No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6660.13173953550934342No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6050.11967330177650565No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5990.11848645911425933No Hit
GCATCTGCTGCTCCGGTTAAAGCCTCTCCGG5940.11749742356238738No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5810.1149259311275203No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5800.11472812401714591No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5790.11453031690677154No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5420.1072114538229191No Hit

[OK]Adapter Content

Adapter graph