FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534617
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22730.42516418295714503No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21490.4019700084359457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18000.33668963014644127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15460.28917898233688794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12950.24222948391091192No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12340.23081944644483807No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11280.2109921682251032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10940.20463247521122596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9980.1866756949367491No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9920.18555339616959432No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9260.17320810973089146No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9240.17283401014183986No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8060.15076213438779537No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7320.13692044959288613No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6780.12681976068849288No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6560.12270466520892527No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5630.10530903431802581No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5450.10194213801656138No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5410.10119393883845818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)