FastQCFastQC Report
Wed 31 May 2023
EGAF00007948642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457651
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT18240.39855697900802145No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10600.2316175426252756No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6710.14661827462411314No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6510.1422481323104287No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5400.11799384246948001No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4660.10182431590884758No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4630.1011687945617949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)