FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457651
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41300.9024343877758378No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18380.40161607862760046No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10630.23227306397232825No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA6650.1453072319300078No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6150.1343818761457967No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5720.12498607017137513No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5380.11755682823811157No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4760.1040093870656898No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4680.102261330140216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)