FastQCFastQC Report
Wed 31 May 2023
EGAF00007948648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514533
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17740.3447786633704738No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15450.30027228574260545No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15290.2971626698384749No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15020.2919151930002546No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12990.2524619412165984No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11900.23127768286970904No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11700.22739066298954588No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10730.20853861657075443No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10320.20057022581641995No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7480.1453745435181028No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6840.13293607990158066No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6690.13002081499145826No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6690.13002081499145826No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6670.12963211300344196No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6380.12399593417720535No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5700.11078006658465055No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5610.10903090763857712No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5440.10572694074043841No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5260.10222862284829157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)