FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514533
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36280.7051054062616002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20440.3972534317526767No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15290.2971626698384749No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13150.2555715571207289No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12860.2499353782944923No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12650.24585400742032096No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12270.23846866964801092No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11370.22097708018727663No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.1789972654815143No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7380.14343103357802123No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7260.14109882164992332No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7240.14071011966190702No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7150.13896096071583358No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6630.12885470902740934No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6110.11874845733898505No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5980.11622189441687901No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5880.11427838447679739No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.11116876857266687No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5520.1072817486925037No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5340.10378343080035682No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5220.10145121887225891No Hit

[OK]Adapter Content

Adapter graph