FastQCFastQC Report
Wed 31 May 2023
EGAF00007948651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535972
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16430.3065458643361967No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10740.20038360212846937No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10100.18844267984148425No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8480.1582172203025531No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8170.1524333360697947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7030.13116356824610242No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6070.11325218481562468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5750.10728172367213214No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5530.10317703163598099No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.10205757017157614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)