FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514912
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC45470.8830635137654589No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT44200.8583991050898018No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT39570.7684808277919334No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC39550.7680924119072774No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC38060.7391554285004039No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA31000.6020446212168293No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG27750.5389270399602263No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA27110.5264977316512336No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22970.4460956435274377No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC22880.4443477720464857No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21870.42473276987135666No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT21470.4169644521782363No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT20520.3985146976570754No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19900.3864738052327388No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA18600.36122677273009757No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16340.31733577776396743No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT14170.27519265427878936No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC13570.2635401777391088No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG13090.2542181965073643No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT12730.24722671058355603No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12040.23382636256292338No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11680.22683487663911506No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC10450.20294729973276987No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9840.1911006152507613No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9840.1911006152507613No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9350.18158442607668884No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT9240.17944813871108073No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA9220.1790597228264247No Hit
CACGATTTCGGCGAAGGTCATGTTAGCCGCGATGCTACGCGGAA9220.1790597228264247No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9100.1767292275184886No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8760.17012615747933627No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8680.1685724939407122No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG8430.16371729538251198No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT8020.15575476974706357No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8010.15556056180473557No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7910.15361848238145548No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7620.14798645205394317No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6630.12875986576347026No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6460.1254583307438941No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6020.11691318128146169No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5960.11574793362749364No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA5860.11380585420421353No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5760.11186377478093344No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5300.102930209433845No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5280.10254179354918899No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5250.10195916972220496No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)