FastQCFastQC Report
Sun 21 May 2023
EGAF00007948655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460048
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42080.9146871630786353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36060.7838312523910549No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31180.6777553646576009No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27100.5890689667165165No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21540.46821201265954854No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20760.45125726011198836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17860.3882203596146489No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15840.3443118978889159No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14780.32127082391402634No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14560.31648871422112473No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13790.2997513302959691No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13200.2869265815740966No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13100.28475289535005044No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12870.2797534170347442No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11980.2604076096407331No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11780.25606023719264076No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT10480.22780231628004036No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG10220.2221507320975203No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10210.22193336347511566No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9800.21302124995652627No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9710.21106493235488472No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9490.2062828226619831No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9270.2015007129690815No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9020.196066497408966No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8590.18671964664556742No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8320.1808506938406427No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8110.17628595277014572No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7370.16020067471220395No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7130.1549838277744931No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6620.14389802803185756No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6440.1399853928285744No Hit
AAGGAATCCGTTGCAAAAAGCGAAGCTGGCG6300.13694223211490975No Hit
CTGTCCGACGAAGAGCGTGAAACCCTGGCAA6000.13042117344277118No Hit
TCCGAAAAATCTGAAAAATCTGACCGTAAAA5300.11520536987444788No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5280.11477063262963864No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5100.11085799742635552No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4920.10694536222307237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)