FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494408
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39170.7922606430316661No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG22810.46135984854614004No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG21390.4326386304428731No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG16610.33595734696849566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15740.3183605443277617No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9950.20125078882218733No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9860.1994304299283183No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC9700.19619423633921781No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG9540.1929580427501173No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6920.13996537272859663No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6760.13672917913949612No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6740.13632465494085858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.12782964676946976No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC5940.12014368699535605No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5440.110030582029417No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5280.10679438844031651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)