FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484458
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG24230.5001465555321617No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG20690.42707520569378565No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14680.3030190439625313No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG14100.2910469018986166No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12480.2576074706166479No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10490.21653063836287148No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8450.17442172489668867No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8230.16988056756210032No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5970.12323049676132916No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5930.122404831791404No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5190.10713002984778866No Hit
AACGCTCTGGGTGTGTTTCGGACCAGAGGAAACGCTGGCCAGGG5050.10424020245305063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)