FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484458
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45970.9488954666864826No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC25680.5300769106919485No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG25410.5245036721449537No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG24600.5077839565039693No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC15910.3284082417877298No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14630.3019869627501249No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11650.24047492249070096No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8990.18556820199067825No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6430.13272564391546843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6340.1308678977331368No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5590.1153866795470402No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5580.1151802633045589No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.10774927857523252No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5200.10733644609026995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)