FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487567
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43940.9012094748003864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18360.3765636312547814No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC12950.2656045220451753No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12020.2465302204620083No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11070.22704571884479466No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11050.2266355188107481No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10510.21556011789148977No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10190.20899691734674414No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9090.18643591547418098No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8210.16838711397613046No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7580.15546581290366246No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7540.15464541283556926No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6660.13659661133751874No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6310.1294181107417032No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6310.1294181107417032No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5520.11321520939686239No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5430.11136930924365268No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5160.10583160878402352No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5080.10419080864783711No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5060.10378060861379053No Hit

[OK]Adapter Content

Adapter graph