FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473085
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28010.592071192280457No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21730.4593254911908008No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18240.38555439297377847No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17120.36188000042275703No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16670.3523679677013644No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13320.2815561685532198No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13180.27859686948434215No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12650.26739380872359086No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11870.2509062853398438No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11230.23737806102497438No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11130.235264275975776No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8450.17861483665726033No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7730.16339558430303222No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA7530.15916801420463556No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7350.15536320111607851No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7170.15155838802752147No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6990.14775357493896446No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6460.1365505141782132No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6440.13612775716837355No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5060.10695752348943637No Hit

[OK]Adapter Content

Adapter graph