FastQCFastQC Report
Sun 21 May 2023
EGAF00007948665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473085
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44180.9338702347358298No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36280.7668812158491604No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22020.46545546783347597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19450.4111311920690785No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19100.4037329443968843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18300.3868226640032975No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13630.2881089022057347No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13020.27521481340562476No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12930.2733124068613463No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12820.2709872433072281No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12150.2568248834775992No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11720.24773560776604628No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9160.1936227105065686No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8850.18706997685405372No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8740.18474481329993553No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8230.17396450954902395No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7730.16339558430303222No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG7580.1602249067292347No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7330.15494044410623883No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7320.154729065601319No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6800.14373738334548758No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5300.1120306076075124No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4870.1029413318959595No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4840.1023071963812No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4780.10103892535168099No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4780.10103892535168099No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4780.10103892535168099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)