FastQCFastQC Report
Sun 21 May 2023
EGAF00007948666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509600
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25350.4974489795918367No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19000.3728414442700157No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18700.36695447409733123No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16770.32908163265306123No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11670.22900313971742545No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11360.22291993720565148No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11320.22213500784929358No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11230.2203689167974882No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8290.16267660910518053No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7930.1556122448979592No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7560.14835164835164835No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7330.14383830455259025No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7290.14305337519623235No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG7030.1379513343799058No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6790.13324175824175824No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5850.11479591836734696No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5740.11263736263736263No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5170.10145211930926218No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5100.1000784929356358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)