FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471331
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30010.6367075367416953No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29410.6239776293093389No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20360.43196819220462906No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19930.42284509187810687No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17120.36322669206990416No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16110.3417980145587708No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16070.34094935406328036No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15060.319520676552147No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14630.31039757622562486No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13880.2944851919351793No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13720.2910905499532176No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12640.268176716574976No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12630.26796455145110337No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11770.24971835079805912No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11080.23507895725084918No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10910.23147215014501488No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10420.2210760590752571No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10200.21640842635005975No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10160.2155597658545693No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10140.21513543560682408No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9850.20898264701451844No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9370.1987987210686333No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9150.19413108834343593No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8970.190312116113729No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8740.18543231826465903No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8730.1852201531407864No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8270.17546055744264646No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7990.16951993397421344No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7550.1601846685238187No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7420.1574265219134748No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7000.1485155867108253No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT6960.14766692621533486No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6920.14681826571984444No Hit
AACCGCACCTGCGGACTCAGCCTGAACAGTACCTTCACCATCGT6510.13811949564106754No Hit
TACCGCACCTGCAGACTCGGCCTGAACGGTGCCTTCACCATCGT6360.13493701878297842No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6340.1345126885352332No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG6290.13345186291587016No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5960.12645041382807412No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5860.12432876258934802No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5740.12178278110287674No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5330.11308401102409983No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5230.11096235978537375No Hit
CAGTGCCATGGCAATTTCGAACAGGAAGCGCGGGCGTTTGGTTA5210.11053802953762855No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5210.11053802953762855No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5120.10862854342277507No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5050.10714338755566682No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5020.10650689218404899No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4840.10268791995434207No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4740.100566268715616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)