FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471331
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44370.9413766546227599No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39070.8289291389702778No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30790.6532564164037588No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23560.49986103184386343No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21870.4640051259093928No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19480.41329766130383955No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG19060.40438672610119003No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18480.39208114891657886No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17550.3723497923964263No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17150.36386318744152196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16210.3439196657974969No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15910.33755471208131865No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15120.32079366729538267No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14360.3046691178810645No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14230.3019109712707206No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13930.29554601755454235No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11810.2505670112935495No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11410.24208040633864522No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11300.23974658997604653No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10930.2318964803927601No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10850.2301991594017792No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10670.22638018717207226No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10080.21386244486358846No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10000.21216512387260758No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9610.20389068404157587No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9580.20325418866995806No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9420.19985954668799633No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9370.1987987210686333No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9350.1983743908208881No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9210.19540407908667157No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9010.19116077660921943No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7830.16612529199225173No Hit
GCCGCGCAGCAGCTGGTACTGAGCGCGGATA7660.1625184848864174No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7010.1487277518346979No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG6730.1427871283662649No Hit
GCAGCGCAGCAGCTGGTGCTGAGCGCAGATA6730.1427871283662649No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6720.1425749632423923No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6270.13302753266812495No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6260.13281536754425233No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6090.12920856043841802No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5970.1266625789519467No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5930.1258139184564563No Hit
ATGCAGACCCTGTCCGAACGTCTGAAGAAAC5730.12157061597900415No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5630.11944896474027807No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5510.11690298325380678No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5270.11181102028086419No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5150.10926503879439291No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5100.10820421317502987No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5080.10777988292728465No Hit
ACCCCGTGCGAACTGACCGCGGCCAAAAACG5060.10735555267953943No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4970.10544606656468596No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4860.10311225020208728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)