FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485158
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44990.9273267677746219No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14420.29722276042031665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11210.2310587478718273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9260.1908656561367637No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9060.18674328775368024No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8420.1735517089278132No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7480.154176577527321No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6850.14119111712060814No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5890.12140374888180758No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5730.11810585417534082No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5530.11398348579225737No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5470.11274677527733233No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5360.11047947266663644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)