FastQCFastQC Report
Wed 31 May 2023
EGAF00007948672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490429
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23000.4689771608122685No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15230.3105444417030804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14030.28607606809548375No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12930.2636467256218535No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12270.25018912013767536No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11010.22449732784969892No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10970.22368171539611237No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10190.2077772725511746No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9330.19024160479906368No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8300.16923958411920992No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT8220.1676083592120368No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7180.14640243541878642No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6560.13376044238819482No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6470.13192531436762509No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6470.13192531436762509No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6370.1298862832336587No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6180.12601212407912257No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6170.12580822096572591No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6130.12499260851213938No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6050.12336138360496626No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5780.11785599954325701No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5460.1113310999145646No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG5360.10929206878059822No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC5250.1070491345332352No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5110.10419449094568226No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4910.10011642867774949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)