FastQCFastQC Report
Wed 31 May 2023
EGAF00007948673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490429
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31160.6353621013439255No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26400.5383042193671256No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16460.3356245246508669No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15480.3156420195379963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13170.26854040034337284No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11030.2249051340764922No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10860.22143878114874935No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10140.20675775698419138No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8950.1824932864899914No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8760.1786191273354553No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8570.17474496818091914No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8320.1696473903460032No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG8050.16414200628429396No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6920.1411009544704738No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6900.14069314824368054No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6710.13681898908914442No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6550.13355653927479819No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6260.12764334898629567No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC6090.12417699605855283No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6030.12295357737817297No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5910.12050674001741332No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5820.11867161199684358No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5490.11194280925475451No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5470.11153500302796124No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA5410.1103115843475814No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5180.10562181273945871No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5150.1050101033992688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)