FastQCFastQC Report
Wed 31 May 2023
EGAF00007948675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464242
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72031.5515614700953382No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45070.97082986890458No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16130.34744809819016803No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15780.33990892680972423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14110.303936309080178No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13740.29596632790656596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13350.2875655369397857No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11960.25762425631459457No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11770.25353156327949644No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10610.22854459527573984No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10030.21605111127386148No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9360.20161898320272617No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8910.19192576285644125No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8830.19020252368376836No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8540.18395578168282922No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8400.1809401131306517No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8390.18072470823406758No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7220.1555223353337268No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6840.14733694926353066No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6450.1389361582967504No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5710.12299619594952634No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5680.122349981259774No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5620.12105755188026934No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5560.1197651225007647No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5410.11653404905200306No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5200.11201054622373677No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4860.10468677973987704No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4740.10210192098086773No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4650.10016327691161075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)