FastQCFastQC Report
Sun 21 May 2023
EGAF00007948676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417852
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8570.20509654135914152No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7780.1861903257612743No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7270.17398504733733475No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6930.16584819505470835No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5590.13377942429376907No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4770.1141552511415525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)