FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417852
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39160.937173927610733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10840.2594219963049118No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7550.18068598451126236No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7420.17757483510908167No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7290.17446368570690102No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6140.14694197945684118No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5020.12013823076113073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)