FastQCFastQC Report
Wed 31 May 2023
EGAF00007948678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490545
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15850.32311001029467223No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13420.2735732705460253No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12430.2533916358336136No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9090.18530410054123475No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8870.1808192928273655No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6440.13128255307871856No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5970.12170137296272512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)