FastQCFastQC Report
Wed 31 May 2023
EGAF00007948679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490545
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46030.9383440866791019No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32290.6582474594583576No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12350.2517607966649339No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11220.22872519340733266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8680.1769460498017511No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.14473697622032636No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6210.12659389046876432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)