FastQCFastQC Report
Wed 31 May 2023
EGAF00007948680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492949
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24340.4937630464814819No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21620.4385849246068052No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20280.4114015851538395No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT18610.37752384120872545No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT16610.33695169277146314No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11070.2245668416002467No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9350.18967479394420111No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8870.1799374783192582No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8110.1645200619130985No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7450.15113125292880195No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6510.1320623431632887No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6470.13125090019454347No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6420.1302365964836119No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5620.11400773710870699No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5480.11116768671809864No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5460.110761965233726No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5440.11035624374935338No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5120.10386469999939141No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5060.10264753554627354No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4980.10102464960878306No Hit

[OK]Adapter Content

Adapter graph