FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492949
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52341.0617731246031537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20400.4138359140600752No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA20230.41038728144290787No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG17270.3503405017557597No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11150.22618972753773717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10490.2128009185534406No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10070.20428076738161555No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.19920924882695776No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG9380.19028337617076008No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7360.14930550624912517No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.1430168232413495No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6610.1340909505851518No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6280.12739654609300355No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA6220.12617938163988568No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5660.11481918007745222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5500.11157340820247125No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5400.10954480078060813No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5350.10853049706967659No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5320.10792191484311764No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5320.10792191484311764No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5150.10447328222595036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5060.10264753554627354No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4970.10082178886659675No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4960.10061892812441044No Hit

[OK]Adapter Content

Adapter graph