FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388169
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT18300.47144413902192084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17270.4449093049676816No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG11640.2998693867877136No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11330.2918831745966319No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10260.264317861549995No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9750.251179254396925No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8850.22799347706797812No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8350.2151124896630076No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8320.21433963041870935No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8110.20892961570862179No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7820.20145864301373884No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7750.199655304777043No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7330.18883527535686775No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG6130.15792090558493851No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5840.15044993289005562No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5500.14169086145467566No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5420.13962990346988038No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5360.13808418498128394No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5300.13653846649268747No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5220.1344775085078922No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5210.13421988875979277No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4980.12829463455350634No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4970.12803701480540694No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4830.12443033833201518No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4590.11824746437762933No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4450.1146407879042376No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4290.11051887193464702No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4030.10382075848406236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)