FastQCFastQC Report
Sun 21 May 2023
EGAF00007948683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388169
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34290.883378116232878No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20400.525544286122797No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18010.463973166327038No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17100.44052976924999165No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14990.38617200240101607No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG11400.29368651283332775No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10050.25890784683990736No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9820.25298259263362094No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8790.22644775857938165No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8500.2189767858844988No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8280.21330915142631174No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8150.2099600947010194No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7820.20145864301373884No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6120.1576632858368391No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5980.15405660936344737No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5970.15379898961534796No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5860.15096517238625445No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5560.14323657994327213No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5460.14066038246227802No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.1373113257369857No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5290.13628084674458804No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.13318940976739513No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5130.1321589307749975No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5050.13009797279020222No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4940.1272641555611087No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4800.12365747908771696No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4540.11695936563713227No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4310.11103411143084585No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT4090.10536647697265882No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4040.10407837823216176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)