FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476310
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17410.36551825491801554No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14120.2964455921563688No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11640.2443786609561No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9900.20784783019462114No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8290.17404631437509185No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7760.16291910730406667No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7610.15976989775566333No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6950.1459133757426886No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6950.1459133757426886No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6210.13037727530389873No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5760.12092964665868866No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5420.11379143834897441No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5360.11253175452961307No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5080.10665323003926014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)