FastQCFastQC Report
Wed 31 May 2023
EGAF00007948687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476310
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44720.9388843400306524No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34540.7251579853456782No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17100.359009888517982No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17100.359009888517982No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15340.32205916315004934No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9490.19923999076231863No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8900.18685309987193213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6460.13562595788457096No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6070.12743801305872227No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5790.12155948856836934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5570.11694064789737775No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5490.11526106947156264No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5270.11064222880057106No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5040.10581344082635259No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4810.10098465285213411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)