FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465402
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30300.6510500599481739No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25500.5479134167880672No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16120.3463672266126918No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15720.3377725063493496No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15560.33433461824401267No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12920.277609464505954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12710.27309723636769934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12010.25805647590685044No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9150.19660422602395347No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9030.1940258099449508No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG8480.18220806958285526No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8110.1742579533392637No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8060.1731836133063459No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8050.17296874529976236No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7330.15749824882574634No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6780.14568050846365077No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6730.144606168430733No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6390.1373006562068921No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6290.13515197614105656No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6260.1345073721213059No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6080.13063974800280187No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.12784646391721566No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5930.12741672790404854No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5530.11882200764070633No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5490.1179625356143721No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5460.11731793159462142No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5340.11473951551561877No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.1145246475090352No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5240.1125908354497832No Hit
TCTGTCGATGCAGCTAATGTGTCCATTGATG5150.11065702339053118No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5120.11001241937078053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)