FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477442
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41770.8748706649184612No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.24358979729474992No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.20463218568957064No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9640.20190934186770332No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5630.11792008243933294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5200.10891375287469472No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5130.10744760620138152No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.10556256047855027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)