FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448152
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21530.48041735839625843No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19250.42954176261625515No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13480.3007908031203699No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12530.2795926382120352No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11690.2608489976615077No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC11310.25236973169817384No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG10510.2345186454595762No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9980.22269230082650526No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG9590.21398989628518897No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG9560.21332048055124156No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9400.20975026330352203No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT7890.17605633802816903No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7860.1753869222942216No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7550.16846962637676505No Hit
TAGTGCGCGTCTCAGGCCGGCCGACTTGTCGGACAAATTCCCTG7350.16400685481711563No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG6820.15218051018404471No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6670.14883343151430764No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6470.14437065995465825No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5530.12339563362430603No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5350.11937913922062157No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5000.11156928899123512No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4870.108668487477463No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4850.10822221032149806No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4740.1057676859636909No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4610.10286688444991877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)