FastQCFastQC Report
Sun 21 May 2023
EGAF00007948707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476285
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13130.2756752784572263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10700.22465540590192848No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7360.1545293259288031No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7280.1528496593426205No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6940.14571107635134425No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6860.14403140976516163No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5400.11337749456732837No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5020.10539907828296083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)