FastQCFastQC Report
Wed 31 May 2023
EGAF00007948708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507883
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21670.4266730723414645No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21390.4211599915728622No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20280.3993045642401892No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19320.38040257303355296No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18490.3640602264694821No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18110.356578188283522No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA16620.3272407227648888No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15760.31030768897561056No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13450.26482477263464227No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12960.2551768812895884No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11520.2268238944796341No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC11420.22485493706227616No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10450.20575605011390416No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9820.1933516183845492No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8930.17582789737006357No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8350.16440794434938757No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7480.14727801481837352No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7060.1390083936654702No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6980.13743322773158384No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6480.1275884406447942No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6290.1238474215518141No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6060.11931881949189084No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5220.10277957718608419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)