FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507883
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43780.862009557319304No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38830.7645461651600861No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24060.4737311546163191No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22700.44695333374025115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18010.3546092308661641No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16490.3246810781223235No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC16260.3201524760624002No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15640.307944940074781No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14150.2786074745561478No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13460.26502166837637803No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13420.2642340854094349No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11760.23154939228129312No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG11690.2301711220891426No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10340.20359019695481045No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8530.16795206770063184No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8310.1636203613824444No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8310.1636203613824444No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7970.1569259061634274No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7430.14629353610969456No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6370.12542258748570045No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6320.12443810877702148No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6110.12030329820056983No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5460.10750507498774324No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5380.1059299090538569No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5290.10415784737823476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)