FastQCFastQC Report
Sun 21 May 2023
EGAF00007948711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448970
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37000.8241085150455487No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28900.6436955698599016No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18610.4145043098648017No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16830.37485800833017796No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16010.3565939817805199No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15690.34946655678553135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13310.29645633338530414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12800.2850969997995412No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12080.26906029356081695No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11470.25547363966412007No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11240.25035080294897205No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9580.2133772857874691No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9030.20112702407733257No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8790.19578145533109118No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7210.1605897944183353No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6870.15301690536115997No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6380.14210303583758382No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.14076664365102345No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6220.13853932334008953No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5500.12250261710136534No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5480.12205715303917855No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4910.10936142726685524No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4840.10780230304920152No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4800.10691137492482793No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4700.10468405461389403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)