FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461655
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39680.8595163054662032No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19570.4239096294852217No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7640.1654915467177871No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7400.16029285938633828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6060.13126685511908243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)